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Holmium in PDB 9c90: X-Ray Crystal Structure of Methylorubrum Extorquens Ho(III)-Bound Land

Protein crystallography data

The structure of X-Ray Crystal Structure of Methylorubrum Extorquens Ho(III)-Bound Land, PDB code: 9c90 was solved by J.J.Jung, C.-Y.Lin, A.K.Boal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.08 / 1.38
Space group I 21 3
Cell size a, b, c (Å), α, β, γ (°) 78.164, 78.164, 78.164, 90, 90, 90
R / Rfree (%) 22.1 / 22.3

Holmium Binding Sites:

The binding sites of Holmium atom in the X-Ray Crystal Structure of Methylorubrum Extorquens Ho(III)-Bound Land (pdb code 9c90). This binding sites where shown within 5.0 Angstroms radius around Holmium atom.
In total only one binding site of Holmium was determined in the X-Ray Crystal Structure of Methylorubrum Extorquens Ho(III)-Bound Land, PDB code: 9c90:

Holmium binding site 1 out of 1 in 9c90

Go back to Holmium Binding Sites List in 9c90
Holmium binding site 1 out of 1 in the X-Ray Crystal Structure of Methylorubrum Extorquens Ho(III)-Bound Land


Mono view


Stereo pair view

A full contact list of Holmium with other atoms in the Ho binding site number 1 of X-Ray Crystal Structure of Methylorubrum Extorquens Ho(III)-Bound Land within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ho101

b:20.4
occ:0.50
OE2 A:GLU75 2.2 30.6 1.0
OE1 A:GLU73 2.3 23.2 1.0
OE1 A:GLU70 2.4 21.5 1.0
OE2 A:GLU70 2.4 21.4 1.0
CD A:GLU70 2.7 21.0 1.0
CD A:GLU75 3.3 30.5 1.0
CD A:GLU73 3.4 23.5 1.0
OE2 A:GLU73 3.9 23.0 1.0
OE1 A:GLU75 4.0 29.9 1.0
CG A:GLU70 4.3 19.5 1.0
CG A:GLU75 4.3 30.0 1.0
CG A:GLU73 4.7 24.8 1.0
NH2 A:ARG69 4.8 24.7 1.0
NE A:ARG69 4.8 23.3 1.0
CB A:GLU73 4.8 25.8 1.0
CB A:GLU75 5.0 27.8 1.0

Reference:

W.B.Larrinaga, J.J.Jung, C.-Y.Lin, A.K.Boal, J.A.Cotruvo. Modulating Metal-Centered Dimerization of A Lanthanide Chaperone Protein For Separation of Light Lanthanides To Be Published.
Page generated: Fri Aug 8 11:39:18 2025

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