Holmium in PDB 1w6z: High Energy Tetragonal Lysozyme X-Ray Structure

All present enzymatic activity of High Energy Tetragonal Lysozyme X-Ray Structure:
3.2.1.17;

The structure of High Energy Tetragonal Lysozyme X-Ray Structure, PDB code: 1w6z was solved by J.Jakoncic, M.Aslantas, V.Honkimaki, M.Di Michiel, V.Stojanoff, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.49 / 1.65
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	77.453, 77.453, 37.183, 90.00, 90.00, 90.00
R / Rfree (%)	19.7 / 22.6

The structure of High Energy Tetragonal Lysozyme X-Ray Structure also contains other interesting chemical elements:

Chlorine

(Cl)

5 atoms

The binding sites of Holmium atom in the High Energy Tetragonal Lysozyme X-Ray Structure (pdb code 1w6z). This binding sites where shown within 5.0 Angstroms radius around Holmium atom.
In total 3 binding sites of Holmium where determined in the High Energy Tetragonal Lysozyme X-Ray Structure, PDB code: 1w6z:
Jump to Holmium binding site number: 1; 2; 3;

Holmium binding site 1 out of 3 in the High Energy Tetragonal Lysozyme X-Ray Structure


Mono view


Stereo pair view

A full contact list of Holmium with other atoms in the Ho binding site number 1 of High Energy Tetragonal Lysozyme X-Ray Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Ho1130 b:24.1 occ:1.00 OD2 A:ASP52 2.1 13.5 1.0 O A:HOH2116 2.3 20.1 1.0 OD1 A:ASN46 2.4 14.2 1.0 O A:HOH2057 2.9 15.3 1.0 CG A:ASP52 3.3 12.0 1.0 CG A:ASN46 3.6 15.5 1.0 OD1 A:ASP52 3.9 13.3 1.0 ND2 A:ASN46 4.2 14.6 1.0 CB A:ASP52 4.3 11.7 1.0 O A:HOH2056 4.3 14.3 1.0 O A:HOH2032 4.5 16.2 1.0 CB A:ASN46 4.8 15.0 1.0 O A:HOH2052 5.0 13.0 1.0

Holmium binding site 2 out of 3 in the High Energy Tetragonal Lysozyme X-Ray Structure


Mono view


Stereo pair view

A full contact list of Holmium with other atoms in the Ho binding site number 2 of High Energy Tetragonal Lysozyme X-Ray Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Ho1131 b:29.8 occ:1.00 OD2 A:ASP101 2.4 18.3 1.0 OD1 A:ASP101 2.4 17.7 1.0 CG A:ASP101 2.8 15.7 1.0 O A:HOH2117 2.8 27.9 1.0 CB A:ASP101 4.3 16.2 1.0 O A:ASP101 4.4 16.6 1.0

Holmium binding site 3 out of 3 in the High Energy Tetragonal Lysozyme X-Ray Structure


Mono view


Stereo pair view

A full contact list of Holmium with other atoms in the Ho binding site number 3 of High Energy Tetragonal Lysozyme X-Ray Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Ho1132 b:33.0 occ:0.50 O A:LEU129 2.4 23.2 1.0 OXT A:LEU129 2.5 19.8 1.0 C A:LEU129 2.8 22.8 1.0 CA A:LEU129 4.3 23.3 1.0 CE A:LYS13 4.7 23.1 1.0 CB A:LEU129 5.0 25.2 1.0

J.Jakoncic, M.Di Michiel, Z.Zhong, V.Honkimaki, Y.Jouanneau, V.Stojanoff. Anomalous Diffraction at Ultra-High Energy For Protein Crystallography. J.Appl.Crystallogr. V. 39 831 2006.
ISSN: ISSN 0021-8898
DOI: 10.1107/S0021889806036387