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Holmium in PDB 4bsp: Crystal Structure of R-Spondin 1 (FU1FU2) - Holmium Soak

Protein crystallography data

The structure of Crystal Structure of R-Spondin 1 (FU1FU2) - Holmium Soak, PDB code: 4bsp was solved by W.C.Peng, W.De Lau, F.Forneris, J.C.M.Granneman, M.Huch, H.Clevers, P.Gros, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.916 / 2.00
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 35.630, 64.560, 92.370, 90.00, 90.00, 90.00
R / Rfree (%) 22.81 / 26.03

Holmium Binding Sites:

The binding sites of Holmium atom in the Crystal Structure of R-Spondin 1 (FU1FU2) - Holmium Soak (pdb code 4bsp). This binding sites where shown within 5.0 Angstroms radius around Holmium atom.
In total 2 binding sites of Holmium where determined in the Crystal Structure of R-Spondin 1 (FU1FU2) - Holmium Soak, PDB code: 4bsp:
Jump to Holmium binding site number: 1; 2;

Holmium binding site 1 out of 2 in 4bsp

Go back to Holmium Binding Sites List in 4bsp
Holmium binding site 1 out of 2 in the Crystal Structure of R-Spondin 1 (FU1FU2) - Holmium Soak


Mono view


Stereo pair view

A full contact list of Holmium with other atoms in the Ho binding site number 1 of Crystal Structure of R-Spondin 1 (FU1FU2) - Holmium Soak within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ho200

b:47.8
occ:0.52
OE1 A:GLU103 2.7 36.4 1.0
OE2 A:GLU103 2.7 37.9 1.0
OE2 A:GLU116 2.7 48.4 1.0
OE1 A:GLU116 2.8 46.4 1.0
O A:HOH2014 3.0 50.3 1.0
CD A:GLU103 3.1 32.7 1.0
CD A:GLU116 3.1 50.6 1.0
H A:GLU116 4.2 42.6 1.0
HA A:LYS115 4.3 43.8 1.0
HE2 A:LYS113 4.4 43.4 1.0
CG A:GLU103 4.6 33.9 1.0
CG A:GLU116 4.6 48.5 1.0
N A:GLU116 4.9 35.5 1.0
HG2 A:GLU103 4.9 40.7 1.0
HG3 A:GLU116 4.9 58.2 1.0
HG3 A:GLU103 5.0 40.7 1.0

Holmium binding site 2 out of 2 in 4bsp

Go back to Holmium Binding Sites List in 4bsp
Holmium binding site 2 out of 2 in the Crystal Structure of R-Spondin 1 (FU1FU2) - Holmium Soak


Mono view


Stereo pair view

A full contact list of Holmium with other atoms in the Ho binding site number 2 of Crystal Structure of R-Spondin 1 (FU1FU2) - Holmium Soak within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ho201

b:43.3
occ:0.19
OE2 A:GLU100 2.7 84.4 1.0
OE1 A:GLU100 2.7 66.0 1.0
CD A:GLU100 3.1 71.8 1.0
CG A:GLU100 4.6 61.2 1.0
HE1 A:HIS101 4.8 65.7 1.0
HG2 A:GLU100 5.0 73.4 1.0

Reference:

W.C.Peng, W.De Lau, F.Forneris, J.C.M.Granneman, M.Huch, H.Clevers, P.Gros. Structure of Stem Cell Growth Factor R-Spondin 1 in Complex with the Ectodomain of Its Receptor LGR5. Cell Rep. V. 3 1885 2013.
ISSN: ISSN 2211-1247
PubMed: 23809763
DOI: 10.1016/J.CELREP.2013.06.009
Page generated: Sun Dec 13 19:18:57 2020

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