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Holmium in PDB 3eeu: Structure of the Rna Pyrophosphohydrolase Bdrpph in Complex with Holmium

Protein crystallography data

The structure of Structure of the Rna Pyrophosphohydrolase Bdrpph in Complex with Holmium, PDB code: 3eeu was solved by S.A.Messing, S.B.Gabelli, L.M.Amzel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.40 / 2.00
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 70.212, 70.212, 99.915, 90.00, 90.00, 120.00
R / Rfree (%) 21.6 / 25.6

Other elements in 3eeu:

The structure of Structure of the Rna Pyrophosphohydrolase Bdrpph in Complex with Holmium also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Holmium Binding Sites:

The binding sites of Holmium atom in the Structure of the Rna Pyrophosphohydrolase Bdrpph in Complex with Holmium (pdb code 3eeu). This binding sites where shown within 5.0 Angstroms radius around Holmium atom.
In total 2 binding sites of Holmium where determined in the Structure of the Rna Pyrophosphohydrolase Bdrpph in Complex with Holmium, PDB code: 3eeu:
Jump to Holmium binding site number: 1; 2;

Holmium binding site 1 out of 2 in 3eeu

Go back to Holmium Binding Sites List in 3eeu
Holmium binding site 1 out of 2 in the Structure of the Rna Pyrophosphohydrolase Bdrpph in Complex with Holmium


Mono view


Stereo pair view

A full contact list of Holmium with other atoms in the Ho binding site number 1 of Structure of the Rna Pyrophosphohydrolase Bdrpph in Complex with Holmium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ho154

b:67.3
occ:0.30
OE1 A:GLU70 2.2 54.4 1.0
OE2 A:GLU73 2.3 53.8 1.0
O A:HOH1309 2.4 28.3 0.3
OE2 A:GLU70 2.8 51.1 1.0
CD A:GLU70 2.8 50.1 1.0
CD A:GLU73 3.4 49.3 1.0
O A:HOH206 3.8 56.4 1.0
CG A:GLU73 4.0 49.0 1.0
O A:HOH1341 4.0 49.5 1.0
CG A:GLU70 4.3 46.3 1.0
OE1 A:GLU73 4.5 52.5 1.0
NH1 A:ARG69 4.5 46.5 1.0
OE2 A:GLU74 4.6 46.2 1.0
CG A:GLU74 4.8 45.5 1.0
O A:GLY54 4.8 43.4 1.0
CB A:GLU70 4.9 42.1 1.0
CA A:GLY55 5.0 44.0 1.0

Holmium binding site 2 out of 2 in 3eeu

Go back to Holmium Binding Sites List in 3eeu
Holmium binding site 2 out of 2 in the Structure of the Rna Pyrophosphohydrolase Bdrpph in Complex with Holmium


Mono view


Stereo pair view

A full contact list of Holmium with other atoms in the Ho binding site number 2 of Structure of the Rna Pyrophosphohydrolase Bdrpph in Complex with Holmium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ho155

b:67.3
occ:0.30
O B:HOH156 2.0 20.1 0.3
O B:HOH158 2.0 30.7 0.3
OE1 B:GLU70 2.2 52.7 1.0
OE1 B:GLU73 2.4 51.5 1.0
O B:HOH157 2.5 41.9 0.3
CD B:GLU70 2.9 48.4 1.0
OE2 B:GLU70 3.0 50.6 1.0
CD B:GLU73 3.7 47.7 1.0
O B:HOH1346 3.9 53.8 1.0
CB B:GLU73 4.1 45.5 1.0
CG B:GLU70 4.4 43.2 1.0
NH1 B:ARG69 4.5 42.4 1.0
CG B:GLU73 4.5 47.2 1.0
O B:HOH1348 4.5 68.3 1.0
OE2 B:GLU73 4.6 49.8 1.0
CG B:GLU74 4.7 46.6 1.0
CA B:GLU70 4.9 42.4 1.0
CB B:GLU70 4.9 42.7 1.0

Reference:

S.A.Messing, S.B.Gabelli, Q.Liu, H.Celesnik, J.G.Belasco, S.A.Pineiro, L.M.Amzel. Structure and Biological Function of the Rna Pyrophosphohydrolase Bdrpph From Bdellovibrio Bacteriovorus. Structure V. 17 472 2009.
ISSN: ISSN 0969-2126
PubMed: 19278661
DOI: 10.1016/J.STR.2008.12.022
Page generated: Sun Dec 13 19:18:55 2020

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