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Holmium in PDB 2m39: The Solution Structure of 3',5'-Linked 2'-O-(2-Methoxyethyl)-Rna Duplex

Holmium Binding Sites:

The binding sites of Holmium atom in the The Solution Structure of 3',5'-Linked 2'-O-(2-Methoxyethyl)-Rna Duplex (pdb code 2m39). This binding sites where shown within 5.0 Angstroms radius around Holmium atom.
In total 2 binding sites of Holmium where determined in the The Solution Structure of 3',5'-Linked 2'-O-(2-Methoxyethyl)-Rna Duplex, PDB code: 2m39:
Jump to Holmium binding site number: 1; 2;

Holmium binding site 1 out of 2 in 2m39

Go back to Holmium Binding Sites List in 2m39
Holmium binding site 1 out of 2 in the The Solution Structure of 3',5'-Linked 2'-O-(2-Methoxyethyl)-Rna Duplex


Mono view


Stereo pair view

A full contact list of Holmium with other atoms in the Ho binding site number 1 of The Solution Structure of 3',5'-Linked 2'-O-(2-Methoxyethyl)-Rna Duplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ho1

b:10.0
occ:1.00
HO5' A:C5L1 0.0 10.0 1.0
O5' A:C5L1 1.0 10.0 1.0
C5' A:C5L1 2.0 10.0 1.0
H5'' A:C5L1 2.3 10.0 1.0
H5' A:C5L1 2.3 10.0 1.0
C4' A:C5L1 3.3 10.0 1.0
H6 A:C5L1 3.4 10.0 1.0
H3' A:C5L1 3.5 10.0 1.0
O4' A:C5L1 3.9 10.0 1.0
C3' A:C5L1 3.9 10.0 1.0
H4' A:C5L1 4.1 10.0 1.0
H71 A:C5L1 4.2 10.0 1.0
C6 A:C5L1 4.4 10.0 1.0
O3' A:C5L1 4.5 10.0 1.0
C1' A:C5L1 4.9 10.0 1.0

Holmium binding site 2 out of 2 in 2m39

Go back to Holmium Binding Sites List in 2m39
Holmium binding site 2 out of 2 in the The Solution Structure of 3',5'-Linked 2'-O-(2-Methoxyethyl)-Rna Duplex


Mono view


Stereo pair view

A full contact list of Holmium with other atoms in the Ho binding site number 2 of The Solution Structure of 3',5'-Linked 2'-O-(2-Methoxyethyl)-Rna Duplex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ho13

b:10.0
occ:1.00
HO5' B:C5L13 0.0 10.0 1.0
O5' B:C5L13 1.0 10.0 1.0
C5' B:C5L13 2.0 10.0 1.0
H5' B:C5L13 2.3 10.0 1.0
H5'' B:C5L13 2.3 10.0 1.0
C4' B:C5L13 3.3 10.0 1.0
H6 B:C5L13 3.3 10.0 1.0
H3' B:C5L13 3.5 10.0 1.0
O4' B:C5L13 3.9 10.0 1.0
C3' B:C5L13 3.9 10.0 1.0
H4' B:C5L13 4.1 10.0 1.0
H71 B:C5L13 4.1 10.0 1.0
C6 B:C5L13 4.4 10.0 1.0
O3' B:C5L13 4.5 10.0 1.0
OP2 B:G4814 4.7 10.0 1.0
C1' B:C5L13 5.0 10.0 1.0

Reference:

M.Plevnik, M.Cevec, J.Plavec. uc(Nmr) Structure of 2'-O-(2-Methoxyethyl) Modified and C5-Methylated Rna Dodecamer Duplex. Biochimie V. 95 2385 2013.
ISSN: ISSN 0300-9084
PubMed: 24012551
DOI: 10.1016/J.BIOCHI.2013.08.025
Page generated: Sun Dec 13 19:18:52 2020

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