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Holmium in PDB 1psr: Human Psoriasin (S100A7)

Protein crystallography data

The structure of Human Psoriasin (S100A7), PDB code: 1psr was solved by D.E.Brodersen, M.Etzerodt, P.Madsen, J.Celis, H.C.Thoegersen, J.Nyborg, M.Kjeldgaard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 1.05
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.805, 61.631, 62.772, 90.00, 90.00, 90.00
R / Rfree (%) 10.7 / 14.1

Holmium Binding Sites:

The binding sites of Holmium atom in the Human Psoriasin (S100A7) (pdb code 1psr). This binding sites where shown within 5.0 Angstroms radius around Holmium atom.
In total 2 binding sites of Holmium where determined in the Human Psoriasin (S100A7), PDB code: 1psr:
Jump to Holmium binding site number: 1; 2;

Holmium binding site 1 out of 2 in 1psr

Go back to Holmium Binding Sites List in 1psr
Holmium binding site 1 out of 2 in the Human Psoriasin (S100A7)


Mono view


Stereo pair view

A full contact list of Holmium with other atoms in the Ho binding site number 1 of Human Psoriasin (S100A7) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ho102

b:8.4
occ:0.62
O A:HOH106 2.2 31.9 1.0
OD1 A:ASP66 2.3 10.0 1.0
O A:LYS68 2.3 8.8 1.0
OD1 A:ASN64 2.4 9.2 1.0
OD1 A:ASP62 2.4 9.3 1.0
OE1 A:GLU73 2.4 9.1 1.0
OE2 A:GLU73 2.6 9.2 1.0
CD A:GLU73 2.9 7.7 1.0
CG A:ASP66 3.1 11.1 1.0
CG A:ASN64 3.4 10.6 1.0
C A:LYS68 3.5 9.3 1.0
OD2 A:ASP66 3.5 14.4 1.0
CG A:ASP62 3.6 8.5 1.0
ND2 A:ASN64 3.8 21.0 1.0
N A:LYS68 4.2 9.3 1.0
N A:ILE69 4.3 8.6 1.0
CA A:LYS68 4.3 9.6 1.0
OD2 A:ASP62 4.3 10.1 1.0
CG A:GLU73 4.4 8.4 1.0
N A:ASP66 4.4 10.6 1.0
CA A:ASP62 4.4 7.9 1.0
OD2 A:ASP70 4.4 12.4 0.5
CB A:ASP66 4.4 11.4 1.0
CA A:ILE69 4.4 8.6 1.0
CB A:ASP62 4.5 8.3 1.0
N A:ASN64 4.5 9.1 1.0
N A:ASP70 4.5 8.3 1.0
NZ A:LYS25 4.5 21.9 0.8
C A:ASP62 4.6 7.8 1.0
CB A:LYS68 4.6 11.4 1.0
CB A:ASN64 4.7 11.1 1.0
CG A:ASP70 4.8 10.5 0.5
CA A:ASP66 4.8 10.9 1.0
N A:LYS63 4.8 8.1 1.0
N A:GLU65 4.8 9.0 1.0
O A:HOH126 4.9 15.0 1.0
CA A:ASN64 4.9 10.2 1.0
C A:ASN64 4.9 9.5 1.0
C A:ILE69 4.9 8.5 1.0
N A:LYS67 5.0 9.7 1.0

Holmium binding site 2 out of 2 in 1psr

Go back to Holmium Binding Sites List in 1psr
Holmium binding site 2 out of 2 in the Human Psoriasin (S100A7)


Mono view


Stereo pair view

A full contact list of Holmium with other atoms in the Ho binding site number 2 of Human Psoriasin (S100A7) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ho102

b:8.5
occ:0.98
OD1 B:ASP62 2.3 9.2 1.0
OD1 B:ASP66 2.3 10.6 1.0
OD1 B:ASN64 2.4 9.8 1.0
O B:LYS68 2.4 9.7 1.0
OE1 B:GLU73 2.4 8.9 1.0
O B:HOH123 2.4 9.5 1.0
OE2 B:GLU73 2.4 8.5 1.0
CD B:GLU73 2.8 8.1 1.0
CG B:ASP66 3.3 11.4 1.0
CG B:ASN64 3.4 10.1 1.0
CG B:ASP62 3.5 9.2 1.0
C B:LYS68 3.5 9.1 1.0
OD2 B:ASP66 3.7 23.4 1.0
ND2 B:ASN64 3.8 10.2 1.0
CA B:ASP62 4.3 8.9 1.0
CG B:GLU73 4.3 7.8 1.0
N B:LYS68 4.3 10.0 1.0
OD2 B:ASP62 4.3 9.8 1.0
CB B:ASP62 4.3 9.3 1.0
N B:ILE69 4.3 9.4 1.0
CA B:ILE69 4.4 8.8 1.0
CA B:LYS68 4.4 10.2 1.0
N B:ASP66 4.5 11.6 1.0
CB B:ASP66 4.6 12.2 1.0
N B:ASP70 4.6 8.5 1.0
C B:ASP62 4.6 8.8 1.0
CB B:ASN64 4.7 9.9 1.0
O B:HOH109 4.7 17.3 1.0
N B:ASN64 4.7 9.4 1.0
CB B:LYS68 4.8 11.5 1.0
N B:LYS63 4.9 8.9 1.0
N B:GLU65 4.9 10.7 1.0
CA B:ASP66 5.0 12.0 1.0
C B:ILE69 5.0 9.0 1.0

Reference:

D.E.Brodersen, M.Etzerodt, P.Madsen, J.E.Celis, H.C.Thogersen, J.Nyborg, M.Kjeldgaard. Ef-Hands at Atomic Resolution: the Structure of Human Psoriasin (S100A7) Solved By Mad Phasing. Structure V. 6 477 1998.
ISSN: ISSN 0969-2126
PubMed: 9562557
DOI: 10.1016/S0969-2126(98)00049-5
Page generated: Sun Dec 13 19:18:50 2020

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