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Holmium in PDB 1buu: One HO3+ Form of Rat Mannose-Binding Protein A

Protein crystallography data

The structure of One HO3+ Form of Rat Mannose-Binding Protein A, PDB code: 1buu was solved by K.K.-S.Ng, S.Park-Snyder, W.I.Weis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.90
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 94.400, 94.400, 94.400, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 21.4

Holmium Binding Sites:

The binding sites of Holmium atom in the One HO3+ Form of Rat Mannose-Binding Protein A (pdb code 1buu). This binding sites where shown within 5.0 Angstroms radius around Holmium atom.
In total only one binding site of Holmium was determined in the One HO3+ Form of Rat Mannose-Binding Protein A, PDB code: 1buu:

Holmium binding site 1 out of 1 in 1buu

Go back to Holmium Binding Sites List in 1buu
Holmium binding site 1 out of 1 in the One HO3+ Form of Rat Mannose-Binding Protein A


Mono view


Stereo pair view

A full contact list of Holmium with other atoms in the Ho binding site number 1 of One HO3+ Form of Rat Mannose-Binding Protein A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ho222

b:18.9
occ:1.00
O A:HOH252 2.3 17.3 1.0
OD1 A:ASP194 2.4 18.8 1.0
OD2 A:ASP161 2.4 19.0 1.0
O A:GLU193 2.5 14.1 1.0
OD2 A:ASP188 2.5 20.4 1.0
OE1 A:GLU165 2.5 13.1 1.0
OD1 A:ASP161 2.5 11.0 1.0
OE2 A:GLU165 2.6 15.1 1.0
CG A:ASP161 2.8 13.8 1.0
CD A:GLU165 2.9 12.6 1.0
C A:GLU193 3.3 17.9 1.0
CG A:ASP188 3.4 20.5 1.0
CG A:ASP194 3.5 18.7 1.0
CA A:ASP194 3.7 16.6 1.0
N A:ASP194 3.9 17.9 1.0
OD1 A:ASP188 4.1 17.9 1.0
CB A:ASP188 4.1 20.5 1.0
CB A:ASP194 4.2 16.3 1.0
N A:GLU193 4.2 20.3 1.0
CB A:ASP161 4.3 15.3 1.0
CG A:GLU165 4.4 12.5 1.0
CA A:GLU193 4.4 19.9 1.0
O A:ASP161 4.4 17.3 1.0
N A:ASP188 4.5 18.8 1.0
OD2 A:ASP194 4.5 18.4 1.0
CZ A:PHE168 4.5 17.8 1.0
OD2 A:ASP206 4.6 19.8 1.0
O A:PRO186 4.6 19.8 1.0
C A:GLY192 4.7 21.2 1.0
N A:GLY166 4.8 16.2 1.0
C A:ASP194 4.9 16.4 1.0
C A:ASP161 4.9 16.6 1.0
CA A:GLU165 4.9 15.5 1.0
CB A:GLU193 4.9 21.3 1.0
CA A:ASP188 5.0 19.3 1.0

Reference:

K.K.Ng, S.Park-Snyder, W.I.Weis. CA2+-Dependent Structural Changes in C-Type Mannose-Binding Proteins. Biochemistry V. 37 17965 1998.
ISSN: ISSN 0006-2960
PubMed: 9922165
DOI: 10.1021/BI981972A
Page generated: Sun Dec 13 19:18:49 2020

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